He said the goal is to stop Israel from turning Jerusalem into a Jewish city.
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His 47-minute audio recording was posted Sunday on jihadi websites.
Al-Zawahri: Keep Jerusalem from 'becoming a Jewish city' (Photo: lowshot.com)
He charged that Egypt's ruling military council takes orders from the United States.
Al-Zawahri called on the Islamic movements to unite against what he described as "the secular American schemes that only seeks evil to Egypt."
He also criticized Pakistan for demolishing bin Laden's house to prevent it from becoming a shrine.