Planes scheduled to leave Eilat Airport were delayed, while two flights heading towards the city from Tel Aviv had to double back. Another flight was rerouted to the nearby Ovda.
The Airport Authority said it was doing its best to clean up the landing strips and restore normal activity at the airport.
The traffic police blocked the northern entrance to Eilat due to the flooding, but later reopened it.
The rain and wind in central Israel caused a power outage in the northern Tel Aviv neighborhood of Ramat Aviv, but the malfunction was repaired within an hour. In Bat Yam, a tree collapsed, damaging two cars.
Flooded Eilat Airport
Getting wet in resort city (Photo: Meir Ohayon)
Weathering the storm (Photo: Meir Ohayon)
Meteorologists warned that the stormy weather was only due to get worse. Rain and thunderstorms were expected to hit northern and central Israel overnight, before subsiding on Saturday afternoon. Temperatures were expected to drop.
With winds reaching 70 km/h (44 mi), the waves in Mediterranean were expected to reach six-meter height over the weekend.
Shahar Chai contributed to the report